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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BLCA cis rs9815354 1 rs6768563 chr3:41865541 ULK4 chr3:41288091-42003660:- 0.62 9.66 6.48E-20 Diastolic blood pressure
BLCA cis rs10935120 1 rs6769885 chr3:134286913 ANAPC13 chr3:134196547-134204865:- 0.49 7.81 5.66E-14 Height
BLCA cis rs10935120 1 rs6769885 chr3:134286913 CEP63 chr3:134204575-134293852:+ 0.22 3.83 0.00015 Height
BLCA cis rs2243480 1 rs67728539 chr7:65378124 CCT6P1 chr7:65216092-65228661:+ 0.31 4.37 1.61E-5 Diabetic kidney disease
BLCA cis rs10935120 1 rs6772896 chr3:134203347 ANAPC13 chr3:134196547-134204865:- 0.51 8.23 2.91E-15 Height
BLCA cis rs10935120 1 rs6772896 chr3:134203347 CEP63 chr3:134204575-134293852:+ 0.26 4.44 1.16E-5 Height
BLCA cis rs9876781 1 rs6776700 chr3:48496758 TREX1 chr3:48501186-48509043:+ -0.19 -3.92 0.000105 Longevity
BLCA cis rs9815354 1 rs6781326 chr3:41777028 ULK4 chr3:41288091-42003660:- 0.63 9.77 2.83E-20 Diastolic blood pressure
BLCA cis rs10935120 1 rs6782563 chr3:134295959 ANAPC13 chr3:134196547-134204865:- -0.47 -7.51 4.32E-13 Height
BLCA cis rs9815354 1 rs6783001 chr3:41862232 ULK4 chr3:41288091-42003660:- 0.64 9.92 8.26E-21 Diastolic blood pressure
BLCA cis rs12638253 1 rs6784421 chr3:156655494 LEKR1 chr3:156544076-156763918:+ 0.24 4.53 7.96E-6 Multiple sclerosis (severity)
BLCA cis rs10935120 1 rs6785027 chr3:134211649 ANAPC13 chr3:134196547-134204865:- -0.48 -7.74 9.22E-14 Height
BLCA cis rs10935120 1 rs6787371 chr3:134254991 ANAPC13 chr3:134196547-134204865:- 0.49 7.7 1.15E-13 Height
BLCA cis rs10935120 1 rs6787371 chr3:134254991 CEP63 chr3:134204575-134293852:+ 0.23 3.93 0.000102 Height
BLCA cis rs344081 1 rs6787952 chr3:156609375 LEKR1 chr3:156544076-156763918:+ -0.46 -6.35 6.01E-10 Bone mineral density